Only by applying a diverse range of methodological approaches to a broad suite of model and non-model systems studied by a well-networked community of interdisciplinary researchers will we truly be able to reveal the extraordinary extent of symbiotic interactions that exist in nature. The author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Nicole S. This manuscript benefited from the insightful editorial comments of Dr. Wood Charlson and 2 Reviewers. Baumann, P. Biology of bacteriocyte-associated endosymbionts of plant sap-sucking insects.
Genetics, physiology, and evolutionary relationships of the genus Buchnera : intracellular symbionts of aphids. Bosch, T. Metaorganisms as the new frontier. Zoology , — Bright, M. A complex journey: transmission of microbial symbionts. Burke, C. Bacterial community assembly based on functional genes rather than species. Dale, C. Molecular interactions between bacterial symbionts and their hosts. Cell , — De Bary, A.
Die Erscheinung der Symbiose. Strassburg: Verlag Trubner. Dubilier, N. Symbiotic diversity in marine animals: the art of harnessing chemosynthesis. Dyall, S. Ancient invasions: from endosymbionts to organelles.
Science , — Erwin, P. Down under the tunic: bacterial biodiversity hotspots and widespread ammonia-oxidizing archaea in coral reef ascidians. ISME J. Fan, L. Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts. Funkhouser, L. Mom knows best: the universality of maternal microbial transmission.
PLoS Biol. Gage, D. Infection and invasion of roots by symbiotic, nitrogen-fixing Rhizobia during nodulation of temperate legumes. Hongoh, Y. Diversity and genomes of uncultured microbial symbionts in the termite gut. Toward the functional analysis of uncultivable, symbiotic microorganisms in the termite gut. Life Sci. Hooper, L. Commensal host-bacterial relationships in the gut. Horn, M. Illuminating the evolutionary history of Chlamydiae.
Kojima, A. Transmission of cyanobacterial symbionts during embryogenesis in the coral reef ascidians Trididemnum nubilum and T. Pubmed Abstract Pubmed Full Text. Lee, S. Bacterial colonization factors control specificity and stability of the gut microbiota. Nature , — Ley, R. This is an exciting time in coevolutionary biology as new discoveries occur each year. A few decades ago, we did not know enough about the coevolutionary process to make the four central points I have emphasized here.
We can do so now because coevolutionary biology has advanced quickly in recent years as researchers have adopted new genetic, ecological, geographical, mathematical, and statistical approaches. We now know that coevolution is a much more pervasive, dynamic, and ongoing process than we ever suspected.
By teaching these four central points about coevolution to the next generation of students and researchers, we would go a long way toward helping them understand the importance of coevolution in the organization of ecosystems and the diversification of life. We would also be preparing them to understand how the coevolutionary process itself may be changing as we are rapidly altering all the major ecosystems on earth. That knowledge would help the next generation of biologists formulate ways to preserve the conditions needed to maintain the coevolving web of life.
Virulence evolution and the trade-off hypothesis: history, current state of affairs and the future. J Evol Biol. Anderson B, Johnson SG. Geographical covariation and local convergence of flower depth in a guild of fly-pollinated plants. New Phytologist. Article Google Scholar.
Archibald JM. The origin and spread of eukaryotic photosynthesis: evolving views in light of genomics. Bot Mar. Bascompte J, Jordano P. Plant-animal mutualistic networks: the architecture of biodiversity. Ann Rev Ecol, Evolut, Systs. Asymmetric coevolutionary networks facilitate biodiversity maintenance. Macroevolutionary chemical escalation in an ancient plant-herbivore arms race. Benkman CW. Diversifying coevolution between crossbills and conifers.
Evolution: Education and Outreach. Coevolution between crossbills and black pine: the importance of competitors, forest area and resource stability. Chemical phenotype matching between a plant and its insect herbivore.
Brockhurst M. Using microbial microcosms to study host-parasite coevoluiton. The evolutionary response of predators to dangerous prey: hotspots and coldspots in the geographic mosaic of coevolution between newts and snakes.
Brodie EDI et al. Parallel arms races between garter snakes and newts involving tetrodotoxin as the phenotypic interface of coevolution. J Chem Ecol. Coevolutionary patterns in the Linum marginale—Melampsora lini association at a continental scale. Can J Bot. Cavalier-Smith T. Predation and eukaryote cell origins: a coevolutionary perspective. Int J Biochem Cell Biol. An experimental study of co-evolution between the cuckoo, Cuculus canorus , and its hosts.
Host egg markings, chick discrimination and general discussion. J Anim Ecol. Douglas, AE. The microbial dimension in insect nutritional ecology.
Funct Ecol. Edelaar P, Benkman CW. Replicated population divergence caused by localized coevolution? A test of three hypotheses in the red crossbill-lodgepole pine system. Butterflies and plants: a study in coevolution. Farrell BD. Gene flow reverses an adaptive cline in a coevolving host-parasitoid interaction.
Am Nat. Futuyma DJ. Sunderland, Massachusetts: Sinauer Associates; Google Scholar. Interaction intimacy affects structure and coevolutionary dynamics in mutualistic networks. Curr Biol. A tropical hawkmoth community: Costa Rican dry forest Sphingidae. Phenotypic mismatches reveal escape from arms-race coevolution. PLOS Biology. Johnson SD, Anderson R.
Coevolution between food-rewarding flowers and their pollinators. Jordano P. Coevolution in multi-specific interactions among free-living species.
The geographic mosaic of the Red Queen: more sex in coevolutionary hotspots. Current Biology. Laine A-L. Spatial scale of local adaptation in a plant-pathogen metapopulation.
Lake JA. Evidence for an early prokaryotic endosymbiosis. Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Transfer of photosynthesis genes to and from Prochlorococcus viruses. Lively CM. Antagonistic coevolution and sex. Increasing productivity accelerates host—parasite coevolution. Losos JB. Lizards in an evolutionary tree: ecology and adaptive radiation of anoles. Berkeley: University of California Press; Temporal lags and overlap in the diversification of weevils and flowering plants.
Medel R. Arms race coevolution: the local and geographic structure of a host-parasite interaction. Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet. Nakagawa S, Takai K. Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance. A mosaic of chemical coevolution in a large blue butterfly. Complex coevolutionary history of symbiotic Bacteroidales bacteria of various protists in the gut of termites.
BMC Evol Biol. Coevolutionary alternation in antagonistic interactions. The geographic selection mosaic for ponderosa pine and crosbills: a tale of two squirrels. Pfennig K, Pfennig D. Character displacement: ecological and reproductive responses to a common evolutionary problem. Q Rev Biol. Interactions of biotic and abiotic environmental factors on an ectomycorrhizal symbiosis, and the potential for selection mosaics.
BMC Biology. The gut microbiota shapes intestinal immune responses during health and disease. Nat Rev Immunol. Schluter D. The ecology of adaptive radiation. Burmeister, A. Host coevolution alters the adaptive landscape of a virus. Canino-Koning, R. Fluctuating environments select for short-term phenotypic variation leading to long-term exploration. PLoS Comput. Chalkowski, K. Parasite ecology of invasive species: conceptual framework and new hypotheses.
Trends Parasitol. Chomicki, G. The evolution of mutualistic dependence. Colizzi, E. Parasites sustain and enhance RNA-like replicators through spatial self-organisation. Combes, C. Conrad, M. Evolution experiments with an artificial ecosystem.
Evolve II: a computer model of an evolving ecosystem. Biosystems 17, — Cooper, T. Crombach, A. Evolution of resource cycling in ecosystems and individuals. BMC Evol. Daida, J. Dawkins, R. Human chauvinism. Evolution 51, — Arms races between and within species.
Dean, J. Plant-rhizobia mutualism influences aphid abundance on soybean. Plant Soil , — DeAngelis, D. Individual-based modeling of ecological and evolutionary processes. Dewdney, A. Computer recreations. Diggle, S. Cooperation and conflict in quorum-sensing bacterial populations. Dolson, E. Digital evolution for ecology research: a review. Drew, G. Microbial evolution and transitions along the parasite-mutualist continuum.
Ebert, D. Sex against virulence: the coevolution of parasitic diseases. Elena, S. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Estrela, S. Transitions in individuality through symbiosis. Fortuna, M. Coevolutionary dynamics shape the structure of bacteria-phage infection networks. Evolution 73, — Non-adaptive origins of evolutionary innovations increase network complexity in interacting digital organisms. Frenoy, A.
Genetic architecture promotes the evolution and maintenance of cooperation. Furubayashi, T. Emergence and diversification of a host-parasite RNA ecosystem through darwinian evolution.
Gilbert, W. Origin of life: the RNA world. Goldsby, H. Task-switching costs promote the evolution of division of labor and shifts in individuality. The evolutionary origin of somatic cells under the dirty work hypothesis. PLoS Biol. Goldsmith, T. Optimization, constraint, and history in the evolution of eyes. Gould, S. Full House.
Griffin, A. Kin selection: fact and fiction. Gupta, A. Host-parasite coevolution promotes innovation through deformations in fitness landscapes. Haraguchi, Y. Host-parasite arms race in mutation modifications: indefinite escalation despite a heavy load?
Hartfield, M. Current hypotheses for the evolution of sex and recombination. Hazen, R. Functional information and the emergence of biocomplexity. Heitman, J.
Sexual reproduction and the evolution of microbial pathogens. Hellweger, F. Advancing microbial sciences by individual-based modelling. Hickinbotham, S. Nothing in evolution makes sense except in the light of parasitism: evolution of complex replication strategies.
Open Sci. New insights into bacterial adaptation through in vivo and in silico experimental evolution. Hoang, K. Association with a novel protective microbe facilitates host adaptation to a stressful environment. Hughes, T. Global warming transforms coral reef assemblages. Husnik, F. The fate of obligate endosymbionts: reduction, integration, or extinction. Johnson, C. Coevolutionary transitions from antagonism to mutualism explained by the co-opted antagonist hypothesis.
Jones, J. Viral and host heterogeneity and their effects on the viral life cycle. High parasite infection level in non-native invasive species: it is just a matter of time. Ecography 41, — Krause, J. Living in Groups.
Oxford: Oxford University Press. Kutter, E. Bacteriophages: Biology and Applications. Laanto, E. Long-term genomic coevolution of host-parasite interaction in the natural environment.
Lafferty, K. Trophic strategies, animal diversity and body size. Lagisz, M. Lareen, A. Plant root-microbe communication in shaping root microbiomes. Plant Mol. Lehman, J. The surprising creativity of digital evolution: a collection of anecdotes from the evolutionary computation and artificial life research communities. Life 26, — Lehtonen, J. The many costs of sex. Lenski, R.
The evolutionary origin of complex features. Liard, V. The complexity ratchet: stronger than selection, stronger than evolvability, weaker than robustness.
Life 26, 38— Lombardo, M. Access to mutualistic endosymbiotic microbes: an underappreciated benefit of group living. Longdon, B. The evolution and genetics of virus host shifts. PLoS Pathog. Luo, T. Examining community stability in the face of mass extinction in communities of digital organisms.
Life 24, — Lynch, M. The frailty of adaptive hypotheses for the origins of organismal complexity. Lynch, Z. Turnover in local parasite populations temporarily favors host outcrossing over self-fertilization during experimental evolution.
Mas, A. Beyond the black queen hypothesis. ISME J. Masri, L. Host-pathogen coevolution: the selective advantage of bacillus thuringiensis virulence and its cry toxin genes.
McCutcheon, J. Extreme genome reduction in symbiotic bacteria. Misevic, D. Experiments with digital organisms on the origin and maintenance of sex in changing environments. Momeni, B. Using artificial systems to explore the ecology and evolution of symbioses.
Life Sci. Moran, N. Symbiosis as an adaptive process and source of phenotypic complexity. Moreno, M. Toward open-ended fraternal transitions in individuality. Life 25, — Morran, L. Running with the Red Queen: host-parasite coevolution selects for biparental sex. Morris, B. Microbial syntrophy: interaction for the common good.
FEMS Microbiol. Morris, J. The black queen hypothesis: evolution of dependencies through adaptive gene loss. O'Callaghan, J. Symbiotic interactions in the evolve III ecosystem model. Biosystems 26, — Ofria, C. Komosinski and A. Adamatzky London: Springer , 3— Avida: a software platform for research in computational evolutionary biology. Life 10, — Oulhen, N. Symbiosis 69, — Pachepsky, E. Mutualism promotes diversity and stability in a simple artificial ecosystem.
Life 8, 5— Paracer, S. Symbiosis: An Introduction to Biological Associations. Pennock, R. Models, simulations, instantiations, and evidence: the case of digital evolution. Puri, K.
Evaluation of natural endosymbiosis for progress towards artificial endosymbiosis. Symbiosis 84, 1— Queller, D. Evolutionary conflict. Raffel, T. Parasites as predators: unifying natural enemy ecology. Railsback, S. Rasmussen, S. The coreworld: Emergence and evolution of cooperative structures in a computational chemistry. D Nonlinear Phenomena 42, — Ray, T. Langton, C. Taylor, J. Farmer, and S.
Evolution, Ecology and Optimization of Digital Organisms. Technical report. An evolutionary approach to synthetic biology: Zen and the art of creating life. Life 1, — Rizki, M. Evolve III: a discrete events model of an evolutionary ecosystem. Biosystems 18, — Rocabert, C. Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification. Rozen, D.
Long-term experimental evolution in Escherichia coli. Ryan, F. Results and Problems in Cell Differentiation, Vol. Kloc Cham: Springer , 3— Sachs, J. Evolutionary transitions in bacterial symbiosis. Sarkar, A. Microbial transmission in animal social networks and the social microbiome. Seth, E. Nutrient cross-feeding in the microbial world. Shanahan, T. Cambridge: Cambridge University Press. Shapiro, J. The impact of transmission mode on the evolution of benefits provided by microbial symbionts.
Simard, S. Mycorrhizal networks: a review of their extent, function, and importance. Simpson, G. Spafford, E. Computer viruses as artificial life. StringMol Strona, G. Past, present and future of host-parasite co-extinctions.
Parasites Wildlife 4, — Stroud, J. Ecological opportunity and adaptive radiation. Sylla, S. Geographic variation of host preference by the invasive tomato leaf miner tuta absoluta: implications for host range expansion. Pest Sci. Szostak, J. Synthesizing life. Taylor, C. Maintenance and breakdown of the hydra-chlorella symbiosis: a computer model.
Taylor, T. Open-ended evolution: perspectives from the OEE workshop in york. Life 22, — Thompson, J. Coevolution: the geographic mosaic of coevolutionary arms races. The Geographic Mosaic of Coevolution. Tooby, J. Pathogens, polymorphism, and the evolution of sex. Vermeij, G. The evolutionary interaction among species: selection, escalation, and coevolution. Vidal, M. Coevolved mutualists experience fluctuating costs and benefits over time.
Evolution 75, — Vostinar, A. Symbulation v0. Suicidal selection: programmed cell death can evolve in unicellular organisms due solely to kin selection. Spatial structure can decrease symbiotic cooperation. Watson, R. Wilke, C. The biology of digital organisms. Williams, H. Phage-induced diversification improves host evolvability. Wolfe, L. Why alien invaders succeed: support for the escape-from-enemy hypothesis.
Yadav, A. Comparative sequence analysis of morbillivirus receptors and its implication in host range expansion. Yamamura, N. Evolution of mutualism through spatial effects. Zaman, L.
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